I have noticed that the German flags for Rapid Transit and Haupstrecke Rhein-Ruhr (Preserved Collection) in the main menu seem to appear as black as I cannot see them. This is a minor bug but I find it very unsatisfying.
The preserved collection routes originally did not have flags, but I believe they are now being added when each route receives an update. That's why some preserved collection routes have them and some are still without.